xvector.py

# coding: utf-8 -*-
#
# This file is part of SIDEKIT.
#
# SIDEKIT is a python package for speaker verification.
# Home page: http://www-lium.univ-lemans.fr/sidekit/
#
# SIDEKIT is a python package for speaker verification.
# Home page: http://www-lium.univ-lemans.fr/sidekit/
#
# SIDEKIT is free software: you can redistribute it and/or modify
# it under the terms of the GNU LLesser General Public License as
# published by the Free Software Foundation, either version 3 of the License,
# or (at your option) any later version.
#
# SIDEKIT is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public License
# along with SIDEKIT.  If not, see <http://www.gnu.org/licenses/>.

"""
Copyright 2014-2021 Anthony Larcher, Yevhenii Prokopalo
"""


import logging
import math
import os
import numpy
import pandas
import pickle
import shutil
import tabulate
import time
import torch
import torchaudio
import tqdm
import yaml

from collections import OrderedDict
from torch.utils.data import DataLoader
from sklearn.model_selection import train_test_split
from .pooling import MeanStdPooling
from .pooling import AttentivePooling
from .pooling import GruPooling
from .preprocessor import MfccFrontEnd
from .preprocessor import MelSpecFrontEnd
from .preprocessor import RawPreprocessor
from .xsets import SideSet
from .xsets import IdMapSet
from .xsets import IdMapSetPerSpeaker
from .xsets import SideSampler
from .res_net import ResBlockWFMS
from .res_net import ResBlock
from .res_net import PreResNet34
from .res_net import PreFastResNet34
from ..bosaris import IdMap
from ..bosaris import Key
from ..bosaris import Ndx
from ..statserver import StatServer
from ..iv_scoring import cosine_scoring
from .sincnet import SincNet
from ..bosaris.detplot import rocch, rocch2eer
from .loss import SoftmaxAngularProto, ArcLinear
from .loss import l2_norm
from .loss import ArcMarginProduct


os.environ['MKL_THREADING_LAYER'] = 'GNU'

__license__ = "LGPL"
__author__ = "Anthony Larcher"
__copyright__ = "Copyright 2015-2021 Anthony Larcher"
__maintainer__ = "Anthony Larcher"
__email__ = "anthony.larcher@univ-lemans.fr"
__status__ = "Production"
__docformat__ = 'reS'


def eer(negatives, positives):
    """Logarithmic complexity EER computation

    Args:
        negative_scores (numpy array): impostor scores
        positive_scores (numpy array): genuine scores

    Returns:
        float: Equal Error Rate (EER)
    """

    positives = numpy.sort(positives)
    negatives = numpy.sort(negatives)[::-1]

    pos_count = positives.shape[0]
    neg_count = negatives.shape[0]

    p_score = positives[0]
    n_score = negatives[0]

    p_index = 0
    n_index = 0

    next_p_jump = pos_count//2
    next_n_jump = neg_count//2

    kdx = 0
    while True:
        kdx += 1
        if p_index < 0 or n_index < 0:
            return 0
        if p_index > pos_count or n_index > neg_count:
            return 100
        if p_score < n_score:
            p_index = p_index + next_p_jump
            n_index = n_index + next_n_jump
            if next_p_jump == 0 and next_n_jump == 0:
                break
        elif p_score >= n_score:
            p_index = p_index - next_p_jump
            n_index = n_index - next_n_jump
            if next_p_jump == 0 and next_n_jump == 0:
                break

        p_score = positives[p_index]
        n_score = negatives[n_index]
        next_p_jump = next_p_jump//2
        next_n_jump = next_n_jump//2

    eer_predicate = 100

    tfr = (abs(p_index))/pos_count
    tfa = (1+abs(n_index))/neg_count
    if (p_score == n_score and tfr == tfa):
        return tfr

    while positives[p_index] < negatives[n_index]:
        if p_index < pos_count - 1:
            p_index += 1
        elif n_index < neg_count - 1:
            n_index += 1
        else:
            break

    while positives[p_index] > negatives[n_index] and n_index >= 1:
        n_index -= 1

    tfr = (1+p_index)/pos_count
    tfa = (1+n_index)/neg_count

    while tfa > tfr:
        p_index += 1
        while positives[p_index] > negatives[n_index] and n_index >= 1:
            n_index -= 1
        tfr = (1+p_index)/pos_count
        tfa = (1+n_index)/neg_count

    if abs(tfr - tfa) <= eer_predicate:
        eer_predicate = abs(tfr - tfa)
        eer = (tfr + tfa) / 2
    else:
        return eer

    tfr = p_index/pos_count
    tfa = (1+n_index)/neg_count
    if abs(tfr - tfa) <= eer_predicate:
        eer_predicate = abs(tfr - tfa)
        eer = (tfr + tfa) / 2
    else:
        return eer

    while True:
        while negatives[n_index + 1] <= positives[p_index - 1]:
            p_index -= 1
            tfr = p_index/pos_count
            tfa = (1+n_index)/neg_count
            if abs(tfr - tfa) <= eer_predicate:
                eer_predicate = abs(tfr - tfa)
                eer = (tfr + tfa) / 2
            else:
                return eer
        while negatives[n_index + 1] > positives[p_index - 1]:
            n_index += 1
            tfr = p_index/pos_count
            tfa = (1+n_index)/neg_count
            if abs(tfr - tfa) <= eer_predicate:
                eer_predicate = abs(tfr - tfa)
                eer = (tfr + tfa) / 2
            else:
                return eer

    return eer


def test_metrics(model,
                 device,
                 num_thread,
                 mixed_precision):
    """Compute model metrics

    Args:
        model ([type]): [description]
        validation_loader ([type]): [description]
        device ([type]): [description]
        speaker_number ([type]): [description]
        model_archi ([type]): [description]

    Raises:
        NotImplementedError: [description]
        NotImplementedError: [description]

    Returns:
        [type]: [description]
    """

    idmap_test_filename = '/lium/raid01_c/larcher/data/allies_dev_verif_idmap.h5'
    ndx_test_filename = '/lium/raid01_c/larcher/data/allies_dev_verif_ndx.h5'
    key_test_filename = '/lium/raid01_c/larcher/data/allies_dev_verif_key.h5'
    data_root_name='/lium/corpus/base/ALLIES/wav'

    transform_pipeline = dict()

    xv_stat = extract_embeddings(idmap_name=idmap_test_filename,
                                 model_filename=model,
                                 data_root_name=data_root_name,
                                 device=device,
                                 loss="aam",
                                 transform_pipeline=transform_pipeline,
                                 num_thread=num_thread,
                                 mixed_precision=mixed_precision)

    tar, non = cosine_scoring(xv_stat,
                              xv_stat,
                              Ndx(ndx_test_filename),
                              wccn=None,
                              check_missing=True,
                              device=device
                              ).get_tar_non(Key(key_test_filename))

    #test_eer = eer(numpy.array(non).astype(numpy.double), numpy.array(tar).astype(numpy.double))
    pmiss, pfa = rocch(tar, non)

    return rocch2eer(pmiss, pfa)

def new_test_metrics(model,
                     device,
                     model_opts,
                     data_opts,
                     train_opts):
    """Compute model metrics

    Args:
        model ([type]): [description]
        validation_loader ([type]): [description]
        device ([type]): [description]
        speaker_number ([type]): [description]
        model_archi ([type]): [description]

    Raises:
        NotImplementedError: [description]
        NotImplementedError: [description]

    Returns:
        [type]: [description]
    """
    transform_pipeline = dict()

    xv_stat = extract_embeddings(idmap_name=data_opts["test"]["idmap"],
                                 model_filename=model,
                                 data_root_name=data_opts["test"]["data_path"],
                                 device=device,
                                 loss=model_opts["loss"]["type"],
                                 transform_pipeline=transform_pipeline,
                                 num_thread=train_opts["num_cpu"],
                                 mixed_precision=train_opts["mixed_precision"])

    tar, non = cosine_scoring(xv_stat,
                              xv_stat,
                              Ndx(data_opts["test"]["ndx"]),
                              wccn=None,
                              check_missing=True,
                              device=device
                              ).get_tar_non(Key(data_opts["test"]["key"]))

    #test_eer = eer(numpy.array(non).astype(numpy.double), numpy.array(tar).astype(numpy.double))
    pmiss, pfa = rocch(tar, non)

    return rocch2eer(pmiss, pfa)


def save_checkpoint(state, is_best, filename='checkpoint.pth.tar', best_filename='model_best.pth.tar'):
    """

    :param state:
    :param is_best:
    :param filename:
    :param best_filename:
    :return:
    """
    torch.save(state, filename)
    if is_best:
        shutil.copyfile(filename, best_filename)


class TrainingMonitor():
    """

    """
    def __init__(self,
                 output_file,
                 log_interval=10,
                 patience=numpy.inf,
                 best_accuracy=0.0,
                 best_eer_epoch=1,
                 best_eer=100,
                 compute_test_eer=False
                 ):

        self.current_epoch = 0
        self.log_interval = log_interval
        self.init_patience = patience
        self.current_patience = patience
        self.best_accuracy = best_accuracy
        self.best_eer_epoch = best_eer_epoch
        self.best_eer = best_eer
        self.compute_test_eer = compute_test_eer
        self.test_eer = []

        self.training_loss = []
        self.training_acc = []

        self.val_loss = []
        self.val_acc = []
        self.val_eer = []

        self.is_best = True

        # Initialize the logger
        logging_format = '%(asctime)-15s %(message)s'
        logging.basicConfig(level=logging.DEBUG, format=logging_format, datefmt='%m-%d %H:%M')
        self.logger = logging.getLogger('Monitoring')
        self.logger.setLevel(logging.DEBUG)
        # create file handler which logs even debug messages
        fh = logging.FileHandler(output_file)
        formatter = logging.Formatter('%(asctime)s - %(levelname)s - %(message)s')
        fh.setFormatter(formatter)
        fh.setLevel(logging.DEBUG)
        self.logger.addHandler(fh)

    def display(self):
        """

        :return:
        """
        # TODO
        self.logger.critical(f"***Validation metrics - Cross validation accuracy = {self.val_acc[-1]} %, EER = {self.val_eer[-1] * 100} %")
        self.logger.critical(f"***Test metrics - Test EER = {self.test_eer[-1] * 100} %")

    def display_final(self):
        """

        :return:
        """
        self.logger.critical(f"Best accuracy {self.best_accuracy * 100.} obtained at epoch {self.best_accuracy_epoch}")

    def update(self,
               epoch=None,
               training_acc=None,
               training_loss=None,
               test_eer=None,
               val_eer=None,
               val_loss=None,
               val_acc=None):

        if epoch is not None:
            self.current_epoch = epoch
        if training_acc is not None:
            self.training_acc.append(training_acc)
        if training_loss is not None:
            self.training_loss.append(training_loss)
        if val_eer is not None:
            self.val_eer.append(val_eer)
        if val_loss is not None:
            self.val_loss.append(val_loss)
        if val_acc is not None:
            self.val_acc.append(val_acc)

        # remember best accuracy and save checkpoint
        if self.compute_test_eer and test_eer is not None:
            self.test_eer.append(test_eer)
            self.is_best = test_eer < self.best_eer
            self.best_eer = min(test_eer, self.best_eer)
            if self.is_best:
                self.best_eer_epoch = epoch
                self.current_patience = self.init_patience
            else:
                self.current_patience -= 1
        elif val_eer is not None:
            self.is_best = val_eer < self.best_eer
            self.best_eer = min(val_eer, self.best_eer)
            if self.is_best:
                self.best_eer_epoch = epoch
                self.current_patience = self.init_patience
            else:
                self.current_patience -= 1


class Xtractor(torch.nn.Module):
    """
    Class that defines an x-vector extractor based on 5 convolutional layers and a mean standard deviation pooling
    """

    def __init__(self,
                 speaker_number,
                 model_archi="xvector",
                 loss=None,
                 norm_embedding=False,
                 aam_margin=0.2,
                 aam_s=30):
        """
        If config is None, default architecture is created
        :param model_archi:
        """
        super(Xtractor, self).__init__()
        self.speaker_number = speaker_number
        self.feature_size = None
        self.norm_embedding = norm_embedding

        print(f"Speaker number : {self.speaker_number}")

        if model_archi == "xvector":

            self.input_nbdim = 2

            if loss not in ["cce", 'aam']:
                raise NotImplementedError(f"The valid loss are for now cce and aam ")
            else:
                self.loss = loss

            self.activation = torch.nn.LeakyReLU(0.2)

            self.preprocessor = MfccFrontEnd()
            self.feature_size = self.preprocessor.n_mfcc

            self.sequence_network = torch.nn.Sequential(OrderedDict([
                ("conv1", torch.nn.Conv1d(self.feature_size, 512, 5, dilation=1)),
                ("activation1", torch.nn.LeakyReLU(0.2)),
                ("batch_norm1", torch.nn.BatchNorm1d(512)),
                ("conv2", torch.nn.Conv1d(512, 512, 3, dilation=2)),
                ("activation2", torch.nn.LeakyReLU(0.2)),
                ("batch_norm2", torch.nn.BatchNorm1d(512)),
                ("conv3", torch.nn.Conv1d(512, 512, 3, dilation=3)),
                ("activation3", torch.nn.LeakyReLU(0.2)),
                ("batch_norm3", torch.nn.BatchNorm1d(512)),
                ("conv4", torch.nn.Conv1d(512, 512, 1)),
                ("activation4", torch.nn.LeakyReLU(0.2)),
                ("batch_norm4", torch.nn.BatchNorm1d(512)),
                ("conv5", torch.nn.Conv1d(512, 1536, 1)),
                ("activation5", torch.nn.LeakyReLU(0.2)),
                ("batch_norm5", torch.nn.BatchNorm1d(1536))
            ]))

            self.stat_pooling = MeanStdPooling()
            self.stat_pooling_weight_decay = 0
            self.before_speaker_embedding = torch.nn.Sequential(OrderedDict([
                ("linear6", torch.nn.Linear(3072, 512))
            ]))

            self.embedding_size = 512

            if self.loss == "aam":
                self.after_speaker_embedding = ArcMarginProduct(512,
                                                                int(self.speaker_number),
                                                                s=64,
                                                                m=0.2,
                                                                easy_margin=True)
            elif self.loss == "cce":
                self.after_speaker_embedding = torch.nn.Sequential(OrderedDict([
                    ("activation6", torch.nn.LeakyReLU(0.2)),
                    ("batch_norm6", torch.nn.BatchNorm1d(512)),
                    ("dropout6", torch.nn.Dropout(p=0.05)),
                    ("linear7", torch.nn.Linear(512, 512)),
                    ("activation7", torch.nn.LeakyReLU(0.2)),
                    ("batch_norm7", torch.nn.BatchNorm1d(512)),
                    ("linear8", torch.nn.Linear(512, int(self.speaker_number)))
                ]))

            self.preprocessor_weight_decay = 0.0002
            self.sequence_network_weight_decay = 0.0002
            self.before_speaker_embedding_weight_decay = 0.002
            self.after_speaker_embedding_weight_decay = 0.002
            self.embedding_size = 512

        elif model_archi == "resnet34":

            self.preprocessor = MelSpecFrontEnd(n_mels=80)
            self.sequence_network = PreResNet34()
            self.embedding_size = 256

            self.before_speaker_embedding = torch.nn.Linear(in_features=5120,
                                                            out_features=self.embedding_size)

            self.stat_pooling = MeanStdPooling()
            self.stat_pooling_weight_decay = 0

            self.loss = "aam"
            self.after_speaker_embedding = ArcMarginProduct(self.embedding_size,
                                                            int(self.speaker_number),
                                                            s = 30.0,
                                                            m = 0.20,
                                                            easy_margin = False)

            self.preprocessor_weight_decay = 0.000
            self.sequence_network_weight_decay = 0.000
            self.stat_pooling_weight_decay = 0.000
            self.before_speaker_embedding_weight_decay = 0.00
            self.after_speaker_embedding_weight_decay = 0.00

        elif model_archi == "fastresnet34":
            self.preprocessor = MelSpecFrontEnd()
            self.sequence_network = PreFastResNet34()
            self.embedding_size = 256

            self.before_speaker_embedding = torch.nn.Linear(in_features = 2560,
                                                            out_features = self.embedding_size)

            self.stat_pooling = MeanStdPooling()
            self.stat_pooling_weight_decay = 0

            self.loss = loss
            if self.loss == "aam":
                self.after_speaker_embedding = ArcMarginProduct(self.embedding_size,
                                                                int(self.speaker_number),
                                                                s = 30,
                                                                m = 0.2,
                                                                easy_margin = False)

            elif self.loss == 'aps':
                self.after_speaker_embedding = SoftmaxAngularProto(int(self.speaker_number))

            self.preprocessor_weight_decay = 0.00002
            self.sequence_network_weight_decay = 0.00002
            self.stat_pooling_weight_decay = 0.00002
            self.before_speaker_embedding_weight_decay = 0.00002
            self.after_speaker_embedding_weight_decay = 0.0002

        elif model_archi == "rawnet2":

            if loss not in ["cce", 'aam']:
                raise NotImplementedError(f"The valid loss are for now cce and aam ")
            else:
                self.loss = loss

            self.input_nbdim = 2

            filts = [128, [128, 128], [128, 256], [256, 256]]
            self.norm_embedding = True

            self.preprocessor = RawPreprocessor(nb_samp=48000,
                                                in_channels=1,
                                                out_channels=filts[0],
                                                kernel_size=3)

            self.sequence_network = torch.nn.Sequential(OrderedDict([
                ("block0", ResBlockWFMS(nb_filts=filts[1], first=True)),
                ("block1", ResBlockWFMS(nb_filts=filts[1])),
                ("block2", ResBlockWFMS(nb_filts=filts[2])),
                ("block3", ResBlockWFMS(nb_filts=[filts[2][1], filts[2][1]])),
                ("block4", ResBlockWFMS(nb_filts=[filts[2][1], filts[2][1]])),
                ("block5", ResBlockWFMS(nb_filts=[filts[2][1], filts[2][1]]))
            ]))

            self.stat_pooling = GruPooling(input_size=filts[2][-1],
                                           gru_node=1024,
                                           nb_gru_layer=1)

            self.before_speaker_embedding = torch.nn.Linear(in_features = 1024,
                                                            out_features = 1024)

            if self.loss == "aam":
                if loss == 'aam':
                    self.after_speaker_embedding = ArcLinear(1024,
                                                             int(self.speaker_number),
                                                             margin=aam_margin, s=aam_s)
            elif self.loss == "cce":
                self.after_speaker_embedding = torch.nn.Linear(in_features = 1024,
                                                               out_features = int(self.speaker_number),
                                                               bias = True)

            self.preprocessor_weight_decay = 0.000
            self.sequence_network_weight_decay = 0.000
            self.stat_pooling_weight_decay = 0.000
            self.before_speaker_embedding_weight_decay = 0.00
            self.after_speaker_embedding_weight_decay = 0.00

        else:
            is_first_resblock = True

            if isinstance(model_archi, dict):
                cfg = model_archi
            else:
                # Load Yaml configuration
                with open(model_archi, 'r') as fh:
                    cfg = yaml.load(fh, Loader=yaml.FullLoader)

            self.loss = cfg["loss"]["type"]
            if self.loss == "aam":
                self.aam_margin = cfg["loss"]["aam_margin"]
                self.aam_s = cfg["loss"]["aam_s"]

            """
            Prepare Preprocessor
            """
            self.preprocessor = None
            if "preprocessor" in cfg:
                if cfg['preprocessor']["type"] == "sincnet":
                    self.preprocessor = SincNet(
                        waveform_normalize=cfg['preprocessor']["waveform_normalize"],
                        sample_rate=cfg['preprocessor']["sample_rate"],
                        min_low_hz=cfg['preprocessor']["min_low_hz"],
                        min_band_hz=cfg['preprocessor']["min_band_hz"],
                        out_channels=cfg['preprocessor']["out_channels"],
                        kernel_size=cfg['preprocessor']["kernel_size"],
                        stride=cfg['preprocessor']["stride"],
                        max_pool=cfg['preprocessor']["max_pool"],
                        instance_normalize=cfg['preprocessor']["instance_normalize"],
                        activation=cfg['preprocessor']["activation"],
                        dropout=cfg['preprocessor']["dropout"]
                    )
                    self.feature_size = self.preprocessor.dimension
                elif cfg['preprocessor']["type"] == "rawnet2":
                    self.preprocessor = RawPreprocessor(nb_samp=int(cfg['preprocessor']["sampling_frequency"] * cfg['preprocessor']["duration"]),
                                                        in_channels=1,
                                                        out_channels=cfg["feature_size"],
                                                        kernel_size=cfg['preprocessor']["kernel_size"],
                                                        stride=cfg['preprocessor']["stride"],
                                                        padding=cfg['preprocessor']["padding"],
                                                        dilation=cfg['preprocessor']["dilation"])
                    self.feature_size = cfg["feature_size"]
                self.preprocessor_weight_decay = 0.000

            """
            Prepare sequence network
            """
            # Get Feature size
            if self.feature_size is None:
                self.feature_size = cfg["preprocessor"]["feature_size"]

            input_size = self.feature_size

            # Get activation function
            if cfg["activation"] == 'LeakyReLU':
                self.activation = torch.nn.LeakyReLU(0.2)
            elif cfg["activation"] == 'PReLU':
                self.activation = torch.nn.PReLU()
            elif cfg["activation"] == 'ReLU6':
                self.activation = torch.nn.ReLU6()
            else:
                self.activation = torch.nn.ReLU()

            # Create sequential object for the first part of the network
            segmental_layers = []
            for k in cfg["segmental"].keys():
                if k.startswith("lin"):
                    segmental_layers.append((k, torch.nn.Linear(input_size,
                                                                cfg["segmental"][k]["output"])))
                    input_size = cfg["segmental"][k]["output"]

                elif k.startswith("conv2D"):
                    segmental_layers.append((k, torch.nn.Conv2d(in_channels=1,
                                                                out_channels=entry_conv_out_channels,
                                                                kernel_size=entry_conv_kernel_size,
                                                                padding=3,
                                                                stride=1)))

                elif k.startswith("conv"):
                    segmental_layers.append((k, torch.nn.Conv1d(input_size,
                                                                cfg["segmental"][k]["output_channels"],
                                                                kernel_size=cfg["segmental"][k]["kernel_size"],
                                                                dilation=cfg["segmental"][k]["dilation"])))
                    input_size = cfg["segmental"][k]["output_channels"]

                elif k.startswith("ctrans"):
                    segmental_layers.append((k, torch.nn.ConvTranspose1d(input_size,
                                                                         cfg["segmental"][k]["output_channels"],
                                                                         kernel_size=cfg["segmental"][k]["kernel_size"],
                                                                         dilation=cfg["segmental"][k]["dilation"])))
                elif k.startswith("activation"):
                    segmental_layers.append((k, self.activation))

                elif k.startswith('batch_norm'):
                    segmental_layers.append((k, torch.nn.BatchNorm1d(input_size)))

                elif k.startswith('resblock'):
                    segmental_layers.append((ResBlock(cfg["segmental"][k]["input_channel"],
                                                      cfg["segmental"][k]["output_channel"],
                                                      is_first_resblock)))
                    is_first_resblock = False

            self.sequence_network = torch.nn.Sequential(OrderedDict(segmental_layers))
            self.sequence_network_weight_decay = cfg["segmental"]["weight_decay"]

            """
            Pooling
            """
            self.stat_pooling = MeanStdPooling()
            tmp_input_size = input_size * 2
            if cfg["stat_pooling"]["type"] == "GRU":
                self.stat_pooling = GruPooling(input_size=cfg["stat_pooling"]["input_size"],
                                               gru_node=cfg["stat_pooling"]["gru_node"],
                                               nb_gru_layer=cfg["stat_pooling"]["nb_gru_layer"])
                tmp_input_size = cfg["stat_pooling"]["gru_node"]

            self.stat_pooling_weight_decay = cfg["stat_pooling"]["weight_decay"]

            """
            Prepare last part of the network (after pooling)
            """
            # Create sequential object for the second part of the network
            input_size = tmp_input_size
            before_embedding_layers = []
            for k in cfg["before_embedding"].keys():
                if k.startswith("lin"):
                    if cfg["before_embedding"][k]["output"] == "speaker_number":
                        before_embedding_layers.append((k, torch.nn.Linear(input_size, self.speaker_number)))
                    else:
                        before_embedding_layers.append((k, torch.nn.Linear(input_size,
                                                                           cfg["before_embedding"][k]["output"])))
                        input_size = cfg["before_embedding"][k]["output"]

                elif k.startswith("activation"):
                    before_embedding_layers.append((k, self.activation))

                elif k.startswith('batch_norm'):
                    before_embedding_layers.append((k, torch.nn.BatchNorm1d(input_size)))

                elif k.startswith('dropout'):
                    before_embedding_layers.append((k, torch.nn.Dropout(p=cfg["before_embedding"][k])))

            self.embedding_size = input_size
            self.before_speaker_embedding = torch.nn.Sequential(OrderedDict(before_embedding_layers))
            self.before_speaker_embedding_weight_decay = cfg["before_embedding"]["weight_decay"]

            # if loss_criteria is "cce"
            # Create sequential object for the second part of the network
            if self.loss == "cce":
                after_embedding_layers = []
                for k in cfg["after_embedding"].keys():
                    if k.startswith("lin"):
                        if cfg["after_embedding"][k]["output"] == "speaker_number":
                            after_embedding_layers.append((k, torch.nn.Linear(input_size, self.speaker_number)))
                        else:
                            after_embedding_layers.append((k, torch.nn.Linear(input_size,
                                                                          cfg["after_embedding"][k]["output"])))
                            input_size = cfg["after_embedding"][k]["output"]

                    elif k.startswith('arc'):
                        after_embedding_layers.append((k, ArcLinear(input_size,
                                                                    self.speaker_number,
                                                                    margin=self.aam_margin,
                                                                    s=self.aam_s)))

                    elif k.startswith("activation"):
                        after_embedding_layers.append((k, self.activation))

                    elif k.startswith('batch_norm'):
                        after_embedding_layers.append((k, torch.nn.BatchNorm1d(input_size)))

                    elif k.startswith('dropout'):
                        after_embedding_layers.append((k, torch.nn.Dropout(p=cfg["after_embedding"][k])))

                self.after_speaker_embedding = torch.nn.Sequential(OrderedDict(after_embedding_layers))

            elif self.loss == "aam":
                self.norm_embedding = True
                self.after_speaker_embedding = ArcMarginProduct(input_size,
                                                                int(self.speaker_number),
                                                                s=64,
                                                                m=0.2,
                                                                easy_margin=True)

            self.after_speaker_embedding_weight_decay = cfg["after_embedding"]["weight_decay"]

    def forward(self, x, is_eval=False, target=None, extract_after_pooling=False):
        """

        :param x:
        :param is_eval: False for training
        :return:
        """
        if self.preprocessor is not None:
            x = self.preprocessor(x, is_eval)

        x = self.sequence_network(x)

        # Mean and Standard deviation pooling
        x = self.stat_pooling(x)

        if extract_after_pooling:
            return x

        x = self.before_speaker_embedding(x)

        if self.norm_embedding:
            x = l2_norm(x)

        if self.loss == "cce":
            if is_eval:
                return x
            else:
                return self.after_speaker_embedding(x), x

        elif self.loss in ['aam', 'aps']:
            x = self.after_speaker_embedding(x, target=target), torch.nn.functional.normalize(x, dim=1)
        elif self.loss == 'smn':
            if not is_eval:
                x = self.after_speaker_embedding(x, target=target), x


        return x

    def context_size(self):
        context = 1
        if isinstance(self, Xtractor):
            for name, module in self.sequence_network.named_modules():
                if name.startswith("conv"):
                    context += module.dilation[0] * (module.kernel_size[0] - 1)
        else:
            for name, module in self.module.sequence_network.named_modules():
                if name.startswith("conv"):
                    context += module.dilation[0] * (module.kernel_size[0] - 1)
        return context


def fill_dict(target_dict, source_dict, prefix = ""):
    """
    Recursively Fill a dictionary target_dict by taking values from source_dict

    :param target_dict: output dictionary that is initialized with default values
    :param source_dict: input dictionary
    :return:
    """
    for k1, v1 in target_dict.items():

        if isinstance(v1, dict):
            if k1 in source_dict and isinstance(source_dict[k1], dict):
                #print(f"\n{prefix}{k1}")
                fill_dict(v1, source_dict[k1], prefix + "\t")
                #print("\n")
            else:
                #print(f"{prefix}{k1} set to default value: {target_dict[k1]}")
                pass
        else:
            if k1 in source_dict and source_dict[k1] is not None:
                target_dict[k1] = source_dict[k1]
                #print(f"{prefix}{k1} set to: {source_dict[k1]}")
            else:
                #print(f"{prefix}{k1} set to default value: {target_dict[k1]}")
                pass


def update_training_dictionary(dataset_description,
                               model_description,
                               training_description,
                               kwargs=None):
    """

    :param dataset_description:
    :param model_description:
    :param training_description:
    :param kwargs:
    :return:
    """
    dataset_opts=dict()
    model_opts=dict()
    training_opts=dict()

    if isinstance(dataset_description, str) and os.path.isfile(dataset_description):
        with open(dataset_description, 'r') as fh:
            tmp_data_dict = yaml.load(fh, Loader=yaml.FullLoader)
    else:
        tmp_data_dict = dataset_description

    if isinstance(model_description, str) and os.path.isfile(model_description):
        with open(model_description, 'r') as fh:
            tmp_model_dict = yaml.load(fh, Loader=yaml.FullLoader)
    else:
        tmp_model_dict = model_description

    if isinstance(training_description, str) and os.path.isfile(training_description):
        with open(training_description, 'r') as fh:
            tmp_train_dict = yaml.load(fh, Loader=yaml.FullLoader)
    else:
        tmp_train_dict = training_description

    # Initialize default dictionaries
    dataset_opts["data_path"] = None
    dataset_opts["dataset_csv"] = None
    dataset_opts["data_file_extension"] = ".wav"
    dataset_opts["sample_rate"] = 16000

    dataset_opts["validation_ratio"] = 0.1
    dataset_opts["batch_size"] = 64

    dataset_opts["train"] = dict()
    dataset_opts["train"]["duration"] = 2.
    dataset_opts["train"]["chunk_per_segment"] = -1
    dataset_opts["train"]["overlap"] = 1.9
    dataset_opts["train"]["sampler"] = dict()
    dataset_opts["train"]["sampler"]["examples_per_speaker"] = 1
    dataset_opts["train"]["sampler"]["samples_per_speaker"] = 100
    dataset_opts["train"]["transformation"] = dict()
    dataset_opts["train"]["transformation"]["pipeline"] = ""
    dataset_opts["train"]["transformation"]["add_noise"] = dict()
    dataset_opts["train"]["transformation"]["add_noise"]["noise_db_csv"] = ""
    dataset_opts["train"]["transformation"]["add_noise"]["data_path"] = ""
    dataset_opts["train"]["transformation"]["add_reverb"] = dict()
    dataset_opts["train"]["transformation"]["add_reverb"]["rir_db_csv"] = ""
    dataset_opts["train"]["transformation"]["add_reverb"]["data_path"] = ""

    dataset_opts["valid"] = dict()
    dataset_opts["valid"]["duration"] = 2.
    dataset_opts["valid"]["transformation"] = dict()
    dataset_opts["valid"]["transformation"]["pipeline"] = ""
    dataset_opts["valid"]["transformation"]["add_noise"] = dict()
    dataset_opts["valid"]["transformation"]["add_noise"]["noise_db_csv"] = ""
    dataset_opts["valid"]["transformation"]["add_noise"]["data_path"] = ""
    dataset_opts["valid"]["transformation"]["add_reverb"] = dict()
    dataset_opts["valid"]["transformation"]["add_reverb"]["noise_db_csv"] = ""
    dataset_opts["valid"]["transformation"]["add_reverb"]["data_path"] = ""

    dataset_opts["test"] = dict()
    dataset_opts["test"]["idmap"] = ""
    dataset_opts["test"]["ndx"] = ""
    dataset_opts["test"]["key"] = ""
    dataset_opts["test"]["data_path"] =""

    # Initialize model options
    model_opts["speaker_number"] = None
    model_opts["loss"] = dict()
    model_opts["loss"]["type"] ="aam"
    model_opts["loss"]["aam_margin"] = 0.2
    model_opts["loss"]["aam_s"] = 30

    model_opts["initial_model_name"] = None
    model_opts["reset_parts"] = []
    model_opts["freeze_parts"] = []

    model_opts["model_type"] = "fastresnet"

    model_opts["preprocessor"] = dict()
    model_opts["preprocessor"]["type"] =  "mel_spec"
    model_opts["preprocessor"]["feature_size"] = 80

    # Initialize training options
    training_opts["log_file"] = "sidekit.log"
    training_opts["seed"] = 42
    training_opts["deterministic"] = False
    training_opts["epochs"] = 100
    training_opts["lr"] = 1e-3
    training_opts["patience"] = 50
    training_opts["multi_gpu"] = False
    training_opts["num_cpu"] = 5
    training_opts["mixed_precision"] = False
    training_opts["clipping"] = False

    training_opts["optimizer"] = dict()
    training_opts["optimizer"]["type"] = "sgd"
    training_opts["optimizer"]["options"] = None

    training_opts["scheduler"] = dict()
    training_opts["scheduler"]["type"] = "ReduceLROnPlateau"
    training_opts["scheduler"]["options"] = None

    training_opts["compute_test_eer"] = False
    training_opts["log_interval"] = 10
    training_opts["validation_frequency"] = 1

    training_opts["tmp_model_name"] = "tmp_model.pt"
    training_opts["best_model_name"] = "best_model.pt"
    training_opts["checkpoint_frequency"] = "10"


    # Use options from the YAML config files
    fill_dict(dataset_opts, tmp_data_dict)
    fill_dict(model_opts, tmp_model_dict)
    fill_dict(training_opts, tmp_train_dict)

    # Overwrite with manually given parameters
    if "lr" in kwargs:
        training_opts["lr"] = kwargs['lr']
    if "batch_size" in kwargs:
        dataset_opts["batch_size"] = kwargs["batch_size"]
    if "optimizer" in kwargs:
        training_opts["optimizer"]["type"] = kwargs["optimizer"]
    if "scheduler" in kwargs:
        training_opts["scheduler"]["type"] = kwargs["scheduler"]
    if "margin" in kwargs: